At the Station Installation step, do the following:

Either leave at same station name as local copy, or type in a new station name.
If enabled (the default), and a reboot is not included at the end of commissioning, when commissioning completes the station is restarted, In cases where commissioning ends in a reboot, such as if commissioning a new JACE (installing core software) and/or changing TCP/IP settings, the next “AUTO-START” setting determines if the installed station is started following the reboot.
Note in
If enabled (the default), the station starts every time the JACE is rebooted. This is recommended.

Allows you to specify which subfolders under that local station that are copied. It produces a “tree” selection dialog upon Next button.

The default, and most typically used.
Copies only the station configuration (components), and not any supporting folders/files like px files, html files, and so forth.